Literature on the spontaneous oscillations
| Authors | Year | Title | Link |
|---|---|---|---|
| Walker, D.A., Sivak, M.N., Prinsley, R.T., & Cheesbrough, J.K. | 1983 | Simultaneous measurement of oscillations in oxygen evolution and chlorophyll a fluorescence in leaf pieces. Plant physiology, 73(3), 542-549. | https://doi.org/10.1104/pp.73.3.542 |
| Sivak M.N., Dietz K.-J., Heber U. & Walker D.A. | 1985 | The relationship between light-scattering and chlorophyll a fluorescence during oscillations in photosynthetic carbon assimilation. Arch Biochem Biophys 237:513-519. | https://doi.org/10.1016/0003-9861(85)90304-2 |
| Walker D.A. & Sivak M.N. | 1985 | Can phosphate limit photosynthetic carbon assimilation in vivo? Physiol. Vég. 23: 829-841. | |
| Laisk A. & Walker D.A. | 1986 | Control of phosphate turnover as a rate-limiting factor and possible cause of oscillations in photosynthesis: A mathematical model. Proc R Soc Lond (B) 227:281-302. | https://doi.org/10.1098/rspb.1986.0024 |
| Sivak, M. N., & Walker, D. A. | 1986 | Photosynthesis in vivo can be limited by phosphate supply. New Phytologist, 102(4), 499-512. | https://doi.org/10.1111/j.1469-8137.1986.tb00826.x |
| Hahn B.D. | 1986 | A mathematical model of the Calvin cycle: analysis of the steady state. Ann. Bot. 57: 639-653. | https://doi.org/10.1093/oxfordjournals.aob.a087147 |
| Horton P., & Nicholson H. | 1987 | Generation of oscillatory behavior in the Laisk model of photosynthetic carbon assimilation. Photosynth. Res. 12: 129-143. | https://doi.org/10.1093/oxfordjournals.aob.a087147 |
| Walker, D.A., Plant, N., & Sivak, M.N. | 1988 | The oxidation status of Pv0, during oscillations in photosynthetic carbon assimilation. Ann Rep Res Inst Photos, pp 22-24. University of Sheffield. | |
| Stitt, M., Gross, L.J., & H Woo K.-C. | 1988 | Interactions between sucrose synthesis and CO2 fixation. II. Alterations of fructose 2,6 bispbosphate during photosynthetic oscillations. J Plant Physiol 133:133-143. | https://doi.org/10.1016/S0176-1617(88)80128-7 |
| Laisk, A., Eichelmann, H., Oja, V., Eatherall A., & Walker, D.A. | 1989 | A mathematical model of the carbon metabolism in photosynthesis. Difficulties in explaining oscillations by fructose 2,6-bisphosphate regulation. Proc R Soc (B) 237: 389-415. | https://doi.org/10.1098/rspb.1989.0057 |
| Laisk A., & Eichelmann, H. | 1989 | Towards understanding oscillations: A mathematical model of the biochemistry of photosynthesis. Phil Trans Roy Soc 323:369-384. | https://doi.org/10.1098/rstb.1989.0017 |
| Laisk, A., & Walker, D. A. | 1989 | A mathematical model of electron transport. Thermodynamic necessity for photosystem II regulation:’light stomata’. Proceedings of the Royal Society of London. B. Biological Sciences, 237(1289), 417-444. | https://doi.org/10.1098/rspb.1989.0058 |
| Ryde-Peterson U. | 1990 | On the mechanistic origin of damped oscillations in biochemical reaction systems. Eur J Biochem 194:431-436. | https://doi.org/10.1111/j.1432-1033.1990.tb15636.x |
| Laisk A., Siebke K., Gerst U., Eichelmann H., Oja V., & Heber U. | 1991 | Oscillations in photosynthesis are initiated and supported by imbalances in the supply of ATP and NADPH to the Calvin cycle. Planta 185: 554-562. | https://doi.org/10.1007/BF00202966 |
| Giersch C., Sivak M.N. & Walker D.A. | 1991 | A mathematical skeleton model of photosynthetic oscillations. Proc Roy Soc (B) 245:77-83. | https://doi.org/10.1098/rspb.1991.0091 |
| Ryde-Peterson U. | 1991 | A theoretical treatment of damped oscillations in biochemical reaction systems with application to the photosynthetic oscillations. PhD Thesis, University of London. | |
| Ryde-Peterson U. | 1991 | Identification of possible two-reactant sources of oscillations in the Calvin photosynthesis cycle and ancillary pathways. Eur J Biochem 198:613-619. | https://doi.org/10.1111/j.1432-1033.1991.tb16058.x |
| Walker, D. A. | 1992 | Concerning oscillations. Photosynthesis research, 34(3), 387-395. | https://doi.org/10.1007/BF00029813 |
| Karavaev V.A. & Kukushkin A.K. | 1993 | A theoretical model of light and dark processes of photosynthesis: the problem of regulation. Biophysics 38: 958-975. | |
| Giersch C. | 1994 | Photosynthetic oscillations: Observations and models. Comments Theor. Biol. 3: 339-364. | |
| Rovers, W., & Giersch, C. | 1995 | Photosynthetic oscillations and the interdependence of photophosphorylation and electron transport as studied by a mathematical model. BioSystems, 35(1), 63-73. | https://doi.org/10.1016/0303-2647(94)01481-L |
| Buschmann P., & Gradmann D. | 1997 | Minimal model for oscillations of membrane voltage in plant cells. J. Theor. Biol. 188: 323-332. | https://doi.org/10.1006/jtbi.1997.0483 |
| Kukushkin A.K. | 1997 | The influence of cyclic electron transport around photosystem II on the dampening oscillations in photosynthesis. Biophysics 42: 1224-1234. | |
| Roussel, M. R. | 1998 | Slowly reverting enzyme inactivation: a mechanism for generating long-lived damped oscillations. Journal of theoretical biology, 195(2), 233-244. | https://doi.org/10.1006/jtbi.1998.0788 |
| Khuznetsova S.A. & Kukushkin A.K. | 1999 | A new theoretical approach to the study of regulatory links in photosynthesis. Biophysics 44: 448-454. | |
| Gradmann D. | 2001 | Models for oscillations in plants. Aust. J. Plant Physiol. 28: 577-590. | https://doi.org/10.1071/PP01017 |
| Ferimazova N., Küpper H., Nedbal L. & Trtílek M. | 2002 | New insights into photosynthetic oscillations revealed by two‐dimensional microscopic measurements of chlorophyll fluorescence kinetics in intact leaves and isolated protoplasts. Photochemistry and Photobiology 76(5), 501-508, | https://doi.org/10.1562/0031-8655(2002)0760501NIIPOR2.0.CO2 |
| Lazár D., Kaňa R., Klinkovský T. & Nauš J. | 2005 | Experimental and theoretical study on high temperature induced changes in chlorophyll a fluorescence oscillations in barley leaves upon 2 % CO2. Photosynthetica 43(1), 13-27 | DOI: 10.1007/s11099-005-3027-x |
Literature on the forced oscillations
| Authors | Year | Title | Link |
|---|---|---|---|
| Tsarouhas, G. E., & Ross, J. | 1987 | Explicit solutions of normal form of driven oscillatory systems. The Journal of chemical physics, 87(11), 6538-6543. | https://doi.org/10.1063/1.453437 |
| Hjelmfelt, A., & Ross, J. | 1989 | Resonant response of a driven chemical system: Effects on efficiency. The Journal of Chemical Physics, 91(4), 2293-2298. | https://doi.org/10.1063/1.457036 |
| Tsarouhas, G. E., & Ross, J. | 1989 | Critical slowing down, phase relations, and dissipation in driven oscillatory systems. The Journal of Physical Chemistry, 93(7), 2833-2836. | https://doi.org/10.1021/j100344a026 |
| Hjelmfelt, A., Harding, R. H., Tsujimoto, K. K., & Ross, J. | 1990 | Theory and experiments on the effects of perturbations on nonlinear chemical systems: Generation of multiple attractors and efficiency. The Journal of Chemical Physics, 92(6), 3559-3568. | https://doi.org/10.1063/1.457865 |
| Lazar, J. G., & Ross, J. | 1990 | Experiments on the effects of external periodic variation of constraints on the thermodynamics of an oscillatory system. The Journal of chemical physics, 92(6), 3579-3589. | https://doi.org/10.1063/1.458563 |
| Kocks, P., & Ross, J. | 1995 | Kinetic model for (damped) oscillations of transthylakoid pH in plants. The Journal of Physical Chemistry, 99(44), 16490-16497. | https://doi.org/10.1021/j100044a044 |
| Kocks, P., Ross, J., & Bjoerkman, O. | 1995 | Thermodynamic efficiency and resonance of photosynthesis in a c3 plant. The Journal of Physical Chemistry, 99(44), 16483-16489. | https://doi.org/10.1021/j100044a043 |
| Lam, H. L. Y., & Bungay, H. R. | 1986 | Frequency response analysis of oxygen evolution by algae. Journal of biotechnology, 4(3), 125-142. | https://doi.org/10.1016/0168-1656(86)90041-6 |
| Lam, H. L. Y., Bungay, H. R., & Culotta, L. G. | 1986 | An engineer looks at photosynthesis. Applied biochemistry and biotechnology, 13(1), 37-73. | https://doi.org/10.1007/BF02798437 |
| Nedbal, L., & Březina, V. | 2002 | Complex metabolic oscillations in plants forced by harmonic irradiance. Biophysical Journal 83(4), 2180-2189. | https://doi.org/10.1016/S0006-3495(02)73978-7 |
| Nedbal, L., Březina, V., Adamec, F., Štys, D., Oja, V., & Laisk, A. | 2003 | Negative feedback regulation is responsible for the non‐linear modulation of photosynthetic activity in plants and cyanobacteria exposed to a dynamic light environment. Biochimica et Biophysica Acta-Bioenergetics 1607(1), 5-17. | https://doi.org/10.1016/j.bbabio.2003.08.005 |
| Nedbal, L., Březina, V., Červený, J., & Trtílek, M. | 2005 | Photosynthesis in dynamic light: systems biology of unconventional chlorophyll fluorescence transients in Synechocystis PCC 6803. Photosynthesis Research 84(1-3), 99-106. | https://doi.org/10.1007/s11120-004-6428-y |
| Matouš, K., Benediktyová, Z., Berger, S., Roitsch, T., & Nedbal, L. | 2006 | Case study of combinatorial imaging: what protocol and what chlorophyll fluorescence image to use when visualizing infection of Arabidopsis thaliana by Pseudomonas syringae? Photosynthesis Research 90(3), 243-253. | https://doi.org/10.1007/s11120-006-9120-6 |
| Berger, S., Benediktyová, Z., Matouš, K., Bonfig, K., Mueller, M. J., Nedbal, L., & Roitsch, T. | 2007 | Visualization of dynamics of plant–pathogen interaction by novel combination of chlorophyll fluorescence imaging and statistical analysis: differential effects of virulent and avirulent strains of P. syringae and of oxylipins on A. thaliana. Journal of Experimental Botany, 58(4), 797-806. | https://doi.org/10.1093/jxb/erl208 |
| Nedbal, L., & Lazár, D. | 2021 | Photosynthesis dynamics and regulation sensed in the frequency domain. Plant Physiology 187(2), 646-661. | https://doi.org/10.1093/plphys/kiab317 |
| Lazár D., Niu Y., Nedbal L. | 2022 | Insights on the regulation of photosynthesis in pea leaves exposed to oscillating light. Journal of Experimental Botany 73(18), 6380-6393. | https://doi.org/10.1093/jxb/erac283 |
| Niu, Y., Lazár, D., Holzwarth, A. R., Kramer, D. M., Matsubara, S., Fiorani, F., Poorter, H., Schrey, S.D. & Nedbal, L. (2023). Plants cope with fluctuating light by frequency‐dependent nonphotochemical quenching and cyclic electron transport. New Phytologist, 239(5), 1869-1886. | 2023 | Plants cope with fluctuating light by frequency-dependent non-photochemical quenching and cyclic electron transport. New Phytologist 239(5), 1869-1886. | https://doi.org/10.1111/nph.19083 |
| Niu, Y., Matsubara, S., Nedbal, L., & Lazár, D. | 2024 | Dynamics and interplay of photosynthetic regulatory processes depend on the amplitudes of oscillating light. Plant Cell and Environment 47(6), 2240-2257. | https://doi.org/10.1111/pce.14879 |
| Fuente, D., Orlando, M., Bailleul, B., Jullien, L., Lazár, D., & Nedbal, L. | 2024 | Mathematical model to simulate dynamics of photosynthetic light reactions in an oscillating light. Plant Physiology and Biochemistry 217, 109138. | https://doi.org/10.1016/j.plaphy.2024.109138 |
| Niu, Y., Fuente, D., Matsubara, S., Lazár, D., & Nedbal, L. | 2025 | Constitutive and regulatory responses of Arabidopsis thaliana to harmonically oscillating light. Physiologia Plantarum, 177(4), e70421. | https://doi.org/10.1111/ppl.70421 |